Detalhe da pesquisa
1.
Fundamental behaviors emerge from simulations of a living minimal cell.
Cell
; 185(2): 345-360.e28, 2022 01 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-35063075
2.
Atoms to Phenotypes: Molecular Design Principles of Cellular Energy Metabolism.
Cell
; 179(5): 1098-1111.e23, 2019 11 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-31730852
3.
Theoretical Description of the Primary Proton-Coupled Electron Transfer Reaction in the Cytochrome bc1 Complex.
J Am Chem Soc
; 143(2): 715-723, 2021 01 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-33397104
4.
NAMD goes quantum: an integrative suite for hybrid simulations.
Nat Methods
; 15(5): 351-354, 2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29578535
5.
An in-silico human cell model reveals the influence of spatial organization on RNA splicing.
PLoS Comput Biol
; 16(3): e1007717, 2020 03.
Artigo
em Inglês
| MEDLINE | ID: mdl-32210422
6.
Protein-guided RNA dynamics during early ribosome assembly.
Nature
; 506(7488): 334-8, 2014 Feb 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-24522531
7.
Generalized correlation-based dynamical network analysis: a new high-performance approach for identifying allosteric communications in molecular dynamics trajectories.
J Chem Phys
; 153(13): 134104, 2020 Oct 07.
Artigo
em Inglês
| MEDLINE | ID: mdl-33032427
8.
Scalable molecular dynamics on CPU and GPU architectures with NAMD.
J Chem Phys
; 153(4): 044130, 2020 Jul 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-32752662
9.
Direction Matters: Monovalent Streptavidin/Biotin Complex under Load.
Nano Lett
; 19(6): 3415-3421, 2019 06 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-30346175
10.
Multiscale modeling and cinematic visualization of photosynthetic energy conversion processes from electronic to cell scales.
Parallel Comput
; 1022020 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-34824485
11.
Mechanisms of Nanonewton Mechanostability in a Protein Complex Revealed by Molecular Dynamics Simulations and Single-Molecule Force Spectroscopy.
J Am Chem Soc
; 141(37): 14752-14763, 2019 09 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-31464132
12.
Integrating experiments, theory and simulations into whole-cell models.
Nat Methods
; 18(5): 446-447, 2021 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-33963354
13.
Simulating biological processes: stochastic physics from whole cells to colonies.
Rep Prog Phys
; 81(5): 052601, 2018 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-29424367
14.
Population FBA predicts metabolic phenotypes in yeast.
PLoS Comput Biol
; 13(9): e1005728, 2017 Sep.
Artigo
em Inglês
| MEDLINE | ID: mdl-28886026
15.
Effects of DNA replication on mRNA noise.
Proc Natl Acad Sci U S A
; 112(52): 15886-91, 2015 Dec 29.
Artigo
em Inglês
| MEDLINE | ID: mdl-26669443
16.
The Conformational Change in Elongation Factor Tu Involves Separation of Its Domains.
Biochemistry
; 56(45): 5972-5979, 2017 11 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-29045140
17.
Combining in Vitro and in Silico Single-Molecule Force Spectroscopy to Characterize and Tune Cellulosomal Scaffoldin Mechanics.
J Am Chem Soc
; 139(49): 17841-17852, 2017 12 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-29058444
18.
Genome-Scale Metabolic Modeling of Archaea Lends Insight into Diversity of Metabolic Function.
Archaea
; 2017: 9763848, 2017.
Artigo
em Inglês
| MEDLINE | ID: mdl-28133437
19.
Genome-wide gene expression and RNA half-life measurements allow predictions of regulation and metabolic behavior in Methanosarcina acetivorans.
BMC Genomics
; 17(1): 924, 2016 11 16.
Artigo
em Inglês
| MEDLINE | ID: mdl-27852217
20.
Ribosome biogenesis in replicating cells: Integration of experiment and theory.
Biopolymers
; 105(10): 735-751, 2016 Oct.
Artigo
em Inglês
| MEDLINE | ID: mdl-27294303